Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099819
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 830
[wgsID] => 513
[fwdFile] => V_34885_R1.fastq.gz
[fwdMd5] => b38c02be96f07e5deba379d56e74d73d
[revFile] => V_34885_R2.fastq.gz
[revMd5] => 2832292fdf41a538aa00a79f3ff3cd34
[rawReads] => 880631688
[FastqRCS] => 1
[enaExperiment] => ERX13611300
[enaRun] => ERR14209080
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1703
[wgsID] => 513
[refGenome] => cf4
[dateSubmitted] => 2024-12-23 11:51:27
[dateCompleted] => 2024-12-24 06:39:37
[bamMd5] => 0a746afee2f98552e52c976d75000453
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 669263262
[primaryReads] => 662080649
[mappedReads] => 668071544
[primaryMapped] => 660888931
[pairedReads] => 650155034
[meanInsertSize] => 351.24
[meanReadDepth] => 27.06
[variantsCalled] => 6139235
[variantsFiltered] => 5856805
[snpCount] => 4150301
[snpHom] => 1919928
[snpHet] => 2230373
[indelCount] => 1715011
[insHom] => 347393
[delHom] => 472613
[insHet] => 417160
[delHet] => 509954
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759328
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759328/V_34885-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242