Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099820
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 831
                    [wgsID] => 514
                    [fwdFile] => V_35415_R1.fastq.gz
                    [fwdMd5] => 79f4c044ce533b43bff273e5e0ef0d42
                    [revFile] => V_35415_R2.fastq.gz
                    [revMd5] => ecfb9dfa610538605b2f183908bbe24b
                    [rawReads] => 1063323428
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611301
                    [enaRun] => ERR14209081
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1740
                    [wgsID] => 514
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-08 10:10:31
                    [dateCompleted] => 2025-01-09 19:57:59
                    [bamMd5] => f398100fa967a1dffbfa9755077612ab
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 577586570
                    [primaryReads] => 569911557
                    [mappedReads] => 576104603
                    [primaryMapped] => 568429590
                    [pairedReads] => 557997104
                    [meanInsertSize] => 324.06
                    [meanReadDepth] => 22.76
                    [variantsCalled] => 6136838
                    [variantsFiltered] => 5898024
                    [snpCount] => 4204111
                    [snpHom] => 1795669
                    [snpHet] => 2408442
                    [indelCount] => 1702165
                    [insHom] => 319548
                    [delHom] => 436790
                    [insHet] => 439182
                    [delHet] => 539022
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759342
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759342/V_35415-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242