Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099822
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 833
[wgsID] => 516
[fwdFile] => V_37160_R1.fastq.gz
[fwdMd5] => 18b1ae54a97a960a7f2d005e0abf5b80
[revFile] => V_37160_R2.fastq.gz
[revMd5] => 122aa8331ba420ad8383bc27c53bdb9f
[rawReads] => 1037472408
[FastqRCS] => 1
[enaExperiment] => ERX13611302
[enaRun] => ERR14209082
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1741
[wgsID] => 516
[refGenome] => cf4
[dateSubmitted] => 2025-01-08 10:10:53
[dateCompleted] => 2025-01-09 20:21:01
[bamMd5] => 1fc0046ef2e305cb01c603052a18d866
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 691905760
[primaryReads] => 681661050
[mappedReads] => 690573161
[primaryMapped] => 680328451
[pairedReads] => 667728152
[meanInsertSize] => 331.83
[meanReadDepth] => 27.41
[variantsCalled] => 6069320
[variantsFiltered] => 5820812
[snpCount] => 4126024
[snpHom] => 1932444
[snpHet] => 2193580
[indelCount] => 1703167
[insHom] => 349282
[delHom] => 472563
[insHet] => 410853
[delHet] => 502387
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759343
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759343/V_37160-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242