Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721117
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 619
                    [wgsID] => 369
                    [fwdFile] => V_40194_R1.fastq.gz
                    [fwdMd5] => a2a3566e8f8982c2c49a2ddd0db3eb67
                    [revFile] => V_40194_R2.fastq.gz
                    [revMd5] => 35545f0b6ffca0a709ae46ce9215e048
                    [rawReads] => 769493016
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632458
                    [enaRun] => ERR11203074
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 838
                    [wgsID] => 369
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-21 14:38:00
                    [dateCompleted] => 2023-06-22 08:24:00
                    [bamMd5] => cfdee839323cf9e895d875987730ec81
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 416256265
                    [primaryReads] => 
                    [mappedReads] => 415315141
                    [primaryMapped] => 
                    [pairedReads] => 392035026
                    [meanInsertSize] => 340.66
                    [meanReadDepth] => 18.86
                    [variantsCalled] => 6372013
                    [variantsFiltered] => 6128165
                    [snpCount] => 4327884
                    [snpHom] => 1768128
                    [snpHet] => 2559756
                    [indelCount] => 1810108
                    [insHom] => 287164
                    [delHom] => 404878
                    [insHet] => 511088
                    [delHet] => 642593
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817172
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817172/V_40194-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242