Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189999
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 113
[wgsID] => 57
[fwdFile] => BaH_25801_R1.fastq.gz
[fwdMd5] => 5ecbe07d4a5ea90653616d9b8fb24d42
[revFile] => BaH_25801_R2.fastq.gz
[revMd5] => 944981016aa355028eddee9a9b00ded5
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019027
[enaRun] => ERR7448273
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 94
[wgsID] => 57
[refGenome] => cf4
[dateSubmitted] => 2022-09-14 16:41:00
[dateCompleted] => 2022-09-15 11:05:00
[bamMd5] => 6e6356be51ba239c6d2d51daaf1b5b31
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 991333330
[primaryReads] =>
[mappedReads] => 797454294
[primaryMapped] =>
[pairedReads] => 781537668
[meanInsertSize] => 460.48
[meanReadDepth] => 37.84
[variantsCalled] => 6214924
[variantsFiltered] => 5883198
[snpCount] => 4086979
[snpHom] => 1995097
[snpHet] => 2091882
[indelCount] => 1806753
[insHom] => 311825
[delHom] => 436904
[insHet] => 489810
[delHet] => 604601
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659974
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659974/BaH_25801-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242