Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099830
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 841
                    [wgsID] => 524
                    [fwdFile] => V_41340_R1.fastq.gz
                    [fwdMd5] => 2c967a77526eb11d395c8a5f84a99c3b
                    [revFile] => V_41340_R2.fastq.gz
                    [revMd5] => 1ba88c5a7b87870942b59a1ba6470971
                    [rawReads] => 1169403636
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611303
                    [enaRun] => ERR14209083
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1742
                    [wgsID] => 524
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-08 10:11:15
                    [dateCompleted] => 2025-01-10 01:09:16
                    [bamMd5] => 91c744d8459e1afefe3314d5db96bcfe
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 773565083
                    [primaryReads] => 762126155
                    [mappedReads] => 772456686
                    [primaryMapped] => 761017758
                    [pairedReads] => 747142778
                    [meanInsertSize] => 342.68
                    [meanReadDepth] => 32.16
                    [variantsCalled] => 6326600
                    [variantsFiltered] => 6057956
                    [snpCount] => 4284238
                    [snpHom] => 1766266
                    [snpHet] => 2517972
                    [indelCount] => 1783715
                    [insHom] => 319196
                    [delHom] => 436089
                    [insHet] => 480250
                    [delHet] => 586772
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759319
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759319/V_41340-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242