Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099830
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 841
[wgsID] => 524
[fwdFile] => V_41340_R1.fastq.gz
[fwdMd5] => 2c967a77526eb11d395c8a5f84a99c3b
[revFile] => V_41340_R2.fastq.gz
[revMd5] => 1ba88c5a7b87870942b59a1ba6470971
[rawReads] => 1169403636
[FastqRCS] => 1
[enaExperiment] => ERX13611303
[enaRun] => ERR14209083
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1742
[wgsID] => 524
[refGenome] => cf4
[dateSubmitted] => 2025-01-08 10:11:15
[dateCompleted] => 2025-01-10 01:09:16
[bamMd5] => 91c744d8459e1afefe3314d5db96bcfe
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 773565083
[primaryReads] => 762126155
[mappedReads] => 772456686
[primaryMapped] => 761017758
[pairedReads] => 747142778
[meanInsertSize] => 342.68
[meanReadDepth] => 32.16
[variantsCalled] => 6326600
[variantsFiltered] => 6057956
[snpCount] => 4284238
[snpHom] => 1766266
[snpHet] => 2517972
[indelCount] => 1783715
[insHom] => 319196
[delHom] => 436089
[insHet] => 480250
[delHet] => 586772
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759319
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759319/V_41340-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242