Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099850
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 861
[wgsID] => 544
[fwdFile] => V_41490_R1.fastq.gz
[fwdMd5] => 6415bf50135e2f98655c07368d99d252
[revFile] => V_41490_R2.fastq.gz
[revMd5] => e79d6cee137b0b536290cf68628512e3
[rawReads] => 994661756
[FastqRCS] => 1
[enaExperiment] => ERX13611304
[enaRun] => ERR14209084
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1743
[wgsID] => 544
[refGenome] => cf4
[dateSubmitted] => 2025-01-08 10:13:33
[dateCompleted] => 2025-01-09 19:31:41
[bamMd5] => 58bf3c4cf9085463515c37aa9b87ab79
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 796254151
[primaryReads] => 789598081
[mappedReads] => 795355305
[primaryMapped] => 788699235
[pairedReads] => 775884294
[meanInsertSize] => 393.68
[meanReadDepth] => 32.53
[variantsCalled] => 6152873
[variantsFiltered] => 5888620
[snpCount] => 4173912
[snpHom] => 1858918
[snpHet] => 2314994
[indelCount] => 1723633
[insHom] => 336622
[delHom] => 458124
[insHet] => 433534
[delHet] => 529212
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759320
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759320/V_41490-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242