Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099853
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 864
[wgsID] => 547
[fwdFile] => V_41494_R1.fastq.gz
[fwdMd5] => 99e554aca36ade986263a20e82928c95
[revFile] => V_41494_R2.fastq.gz
[revMd5] => 338b5bb13fc1b334d95b6cdbc08c60bd
[rawReads] => 1262358674
[FastqRCS] => 1
[enaExperiment] => ERX13611305
[enaRun] => ERR14209085
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1744
[wgsID] => 547
[refGenome] => cf4
[dateSubmitted] => 2025-01-08 10:13:58
[dateCompleted] => 2025-01-10 00:40:55
[bamMd5] => 857eb35ba400e2c814fde79b8f9c7e5c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1019179524
[primaryReads] => 1011149046
[mappedReads] => 1018091700
[primaryMapped] => 1010061222
[pairedReads] => 994641954
[meanInsertSize] => 398.17
[meanReadDepth] => 40.39
[variantsCalled] => 6341222
[variantsFiltered] => 6014430
[snpCount] => 4246667
[snpHom] => 1866901
[snpHet] => 2379766
[indelCount] => 1777631
[insHom] => 338473
[delHom] => 461341
[insHet] => 459772
[delHet] => 555382
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759321
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759321/V_41494-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242