Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190121
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 264
                    [wgsID] => 70
                    [fwdFile] => WHWT_34443_R1.fastq.gz
                    [fwdMd5] => fa75404ce28cd95dc25df33ba5772914
                    [revFile] => WHWT_34443_R2.fastq.gz
                    [revMd5] => 3c4a088a22bea79a5fc2471028141f99
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648186
                    [enaRun] => ERR11223857
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 73
                    [wgsID] => 70
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-11 10:26:00
                    [dateCompleted] => 2022-10-12 04:49:00
                    [bamMd5] => f67e2a6608f23f289bfe91a24bafc372
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 986232534
                    [primaryReads] => 
                    [mappedReads] => 864285163
                    [primaryMapped] => 
                    [pairedReads] => 844698640
                    [meanInsertSize] => 422.58
                    [meanReadDepth] => 39.00
                    [variantsCalled] => 6108512
                    [variantsFiltered] => 5740019
                    [snpCount] => 3982833
                    [snpHom] => 2153192
                    [snpHet] => 1829641
                    [indelCount] => 1766373
                    [insHom] => 342022
                    [delHom] => 473782
                    [insHet] => 441673
                    [delHet] => 540981
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775567
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775567/WHWT_34443-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242