Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721136
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 570
[wgsID] => 389
[fwdFile] => WI_24767_R1.fastq.gz
[fwdMd5] => 0e11969b1f2dde0e054bd9b1b4329ab5
[revFile] => WI_24767_R2.fastq.gz
[revMd5] => cc0eb7b3769ce0314182ae8e3301f3b8
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632409
[enaRun] => ERR11203025
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 789
[wgsID] => 389
[refGenome] => cf4
[dateSubmitted] => 2023-06-13 12:25:00
[dateCompleted] => 2023-06-14 01:12:00
[bamMd5] => 816da669bc3cdc8aa985767a3c78d722
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 569431285
[primaryReads] =>
[mappedReads] => 568306981
[primaryMapped] =>
[pairedReads] => 548394754
[meanInsertSize] => 384.82
[meanReadDepth] => 26.74
[variantsCalled] => 6274762
[variantsFiltered] => 5943591
[snpCount] => 4163615
[snpHom] => 1861125
[snpHet] => 2302490
[indelCount] => 1789793
[insHom] => 305922
[delHom] => 429221
[insHet] => 488787
[delHet] => 601972
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817173
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817173/WI_24767-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242