Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721137
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 571
[wgsID] => 390
[fwdFile] => WI_24768_R1.fastq.gz
[fwdMd5] => afaf472b3c728fba5cb14cbfc6b078b3
[revFile] => WI_24768_R2.fastq.gz
[revMd5] => c1adecc4345166ef47389c8a6205791d
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632410
[enaRun] => ERR11203026
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 790
[wgsID] => 390
[refGenome] => cf4
[dateSubmitted] => 2023-06-13 12:26:00
[dateCompleted] => 2023-06-14 00:20:00
[bamMd5] => 0e6b40d0c9c8b068e00e01e93f597762
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 676503287
[primaryReads] =>
[mappedReads] => 675634044
[primaryMapped] =>
[pairedReads] => 656485690
[meanInsertSize] => 402.13
[meanReadDepth] => 34.47
[variantsCalled] => 6182497
[variantsFiltered] => 5819593
[snpCount] => 4066810
[snpHom] => 1979756
[snpHet] => 2087054
[indelCount] => 1762074
[insHom] => 327823
[delHom] => 457125
[insHet] => 456558
[delHet] => 554720
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817174
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817174/WI_24768-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242