Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721137
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 571
                    [wgsID] => 390
                    [fwdFile] => WI_24768_R1.fastq.gz
                    [fwdMd5] => afaf472b3c728fba5cb14cbfc6b078b3
                    [revFile] => WI_24768_R2.fastq.gz
                    [revMd5] => c1adecc4345166ef47389c8a6205791d
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632410
                    [enaRun] => ERR11203026
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 790
                    [wgsID] => 390
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-13 12:26:00
                    [dateCompleted] => 2023-06-14 00:20:00
                    [bamMd5] => 0e6b40d0c9c8b068e00e01e93f597762
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 676503287
                    [primaryReads] => 
                    [mappedReads] => 675634044
                    [primaryMapped] => 
                    [pairedReads] => 656485690
                    [meanInsertSize] => 402.13
                    [meanReadDepth] => 34.47
                    [variantsCalled] => 6182497
                    [variantsFiltered] => 5819593
                    [snpCount] => 4066810
                    [snpHom] => 1979756
                    [snpHet] => 2087054
                    [indelCount] => 1762074
                    [insHom] => 327823
                    [delHom] => 457125
                    [insHet] => 456558
                    [delHet] => 554720
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817174
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817174/WI_24768-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242