Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190122
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 265
[wgsID] => 69
[fwdFile] => WI_34774_R1.fastq.gz
[fwdMd5] => a43f5962d181f820cb672dc6a7c72f69
[revFile] => WI_34774_R2.fastq.gz
[revMd5] => e2290b9db820a04d7b0f50cd21206d17
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648189
[enaRun] => ERR11223860
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 74
[wgsID] => 69
[refGenome] => cf4
[dateSubmitted] => 2022-10-11 10:26:00
[dateCompleted] => 2022-10-12 03:22:00
[bamMd5] => 1f58449db7c1d1528953d12bcae1d182
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1014836460
[primaryReads] =>
[mappedReads] => 886525115
[primaryMapped] =>
[pairedReads] => 868390784
[meanInsertSize] => 428.82
[meanReadDepth] => 32.03
[variantsCalled] => 5823640
[variantsFiltered] => 5469976
[snpCount] => 3789359
[snpHom] => 2235156
[snpHet] => 1554203
[indelCount] => 1688652
[insHom] => 361109
[delHom] => 498445
[insHet] => 380550
[delHet] => 474322
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21775568
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775568/WI_34774-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242