Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190122
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 265
                    [wgsID] => 69
                    [fwdFile] => WI_34774_R1.fastq.gz
                    [fwdMd5] => a43f5962d181f820cb672dc6a7c72f69
                    [revFile] => WI_34774_R2.fastq.gz
                    [revMd5] => e2290b9db820a04d7b0f50cd21206d17
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648189
                    [enaRun] => ERR11223860
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 74
                    [wgsID] => 69
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-11 10:26:00
                    [dateCompleted] => 2022-10-12 03:22:00
                    [bamMd5] => 1f58449db7c1d1528953d12bcae1d182
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1014836460
                    [primaryReads] => 
                    [mappedReads] => 886525115
                    [primaryMapped] => 
                    [pairedReads] => 868390784
                    [meanInsertSize] => 428.82
                    [meanReadDepth] => 32.03
                    [variantsCalled] => 5823640
                    [variantsFiltered] => 5469976
                    [snpCount] => 3789359
                    [snpHom] => 2235156
                    [snpHet] => 1554203
                    [indelCount] => 1688652
                    [insHom] => 361109
                    [delHom] => 498445
                    [insHet] => 380550
                    [delHet] => 474322
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775568
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775568/WI_34774-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242