Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189986
[wgsExptID] => 20
[Batch] => Edinburgh_10
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 7
[DateSubmitted] => 2018-10-23
[FastqID] => 266
[wgsID] => 45
[fwdFile] => WI_34911_R1.fastq.gz
[fwdMd5] => 4466cf396fba1d62d526d8ef75c00be9
[revFile] => WI_34911_R2.fastq.gz
[revMd5] => 8f423e4fe524d87403a6287d0b0e8aac
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10644420
[enaRun] => ERR11217529
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 81
[wgsID] => 45
[refGenome] => cf4
[dateSubmitted] => 2022-10-06 12:46:00
[dateCompleted] => 2022-10-07 05:05:00
[bamMd5] => 9acd9be7d967c77229bc68e15ba9e9a5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 864694405
[primaryReads] =>
[mappedReads] => 832400334
[primaryMapped] =>
[pairedReads] => 814874418
[meanInsertSize] => 450.33
[meanReadDepth] => 43.20
[variantsCalled] => 6170153
[variantsFiltered] => 5787963
[snpCount] => 4026125
[snpHom] => 1983905
[snpHet] => 2042220
[indelCount] => 1771994
[insHom] => 311388
[delHom] => 437052
[insHet] => 474584
[delHet] => 584322
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21736962
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736962/WI_34911-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242