Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721090
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 575
[wgsID] => 342
[fwdFile] => WI_35360_R1.fastq.gz
[fwdMd5] => bf968d83553504712887dbb67024367a
[revFile] => WI_35360_R2.fastq.gz
[revMd5] => 4eb15ca8b00a9ba32826f4dac4714e65
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632414
[enaRun] => ERR11203030
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 794
[wgsID] => 342
[refGenome] => cf4
[dateSubmitted] => 2023-06-13 12:26:00
[dateCompleted] => 2023-06-14 03:23:00
[bamMd5] => bbc6167e8e9a571713dff023b025a227
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 763398822
[primaryReads] =>
[mappedReads] => 762602165
[primaryMapped] =>
[pairedReads] => 740720250
[meanInsertSize] => 386.53
[meanReadDepth] => 37.84
[variantsCalled] => 6149129
[variantsFiltered] => 5777340
[snpCount] => 4037729
[snpHom] => 1973470
[snpHet] => 2064259
[indelCount] => 1749088
[insHom] => 326141
[delHom] => 457338
[insHet] => 450124
[delHet] => 548735
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817175
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817175/WI_35360-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242