Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189966
[wgsExptID] => 6
[Batch] => CGS_2
[SeqLaboratory] => Cambridge Genomic Services
[Platform] => Illumina
[InstrumentModel] => NextSeq 500
[ReadType] => 150bp:PAIRED:20X
[LibraryPrep] => In house, TruSeq DNA LT
[PcrFree] => Y
[SampleCount] => 2
[DateSubmitted] =>
[FastqID] => 459
[wgsID] => 101
[fwdFile] => WSS_24604_R1.fastq.gz
[fwdMd5] => a0595e0d150a15e63591b28ee801f004
[revFile] => WSS_24604_R2.fastq.gz
[revMd5] => e6f1fe57db057398f8ab33bff8a6814b
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10825746
[enaRun] => ERR11417900
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 280
[wgsID] => 101
[refGenome] => cf4
[dateSubmitted] => 2023-02-09 11:01:00
[dateCompleted] => 2023-02-10 01:31:00
[bamMd5] => 3ae0be7b7d25678f2505ecda98799525
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 454732705
[primaryReads] =>
[mappedReads] => 452209068
[primaryMapped] =>
[pairedReads] => 435274026
[meanInsertSize] => 401.44
[meanReadDepth] => 23.86
[variantsCalled] => 5600268
[variantsFiltered] => 5370081
[snpCount] => 3910066
[snpHom] =>
[snpHet] =>
[indelCount] => 1465154
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21790198
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790198/WSS_24604-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242