Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189967
                    [wgsExptID] => 6
                    [Batch] => CGS_2
                    [SeqLaboratory] => Cambridge Genomic Services
                    [Platform] => Illumina
                    [InstrumentModel] => NextSeq 500
                    [ReadType] => 150bp:PAIRED:20X
                    [LibraryPrep] => In house, TruSeq DNA LT
                    [PcrFree] => Y
                    [SampleCount] => 2
                    [DateSubmitted] => 
                    [FastqID] => 460
                    [wgsID] => 102
                    [fwdFile] => WSS_25078_R1.fastq.gz
                    [fwdMd5] => e7bb4b2d46b22589aa89e35dae289819
                    [revFile] => WSS_25078_R2.fastq.gz
                    [revMd5] => c2d20a7059a4d91d78c2a907fe7ce7cd
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10825747
                    [enaRun] => ERR11417901
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 281
                    [wgsID] => 102
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-09 11:01:00
                    [dateCompleted] => 2023-02-10 00:52:00
                    [bamMd5] => eb447fbe6252595a15a1aaf77e23ab42
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 426083257
                    [primaryReads] => 
                    [mappedReads] => 423788486
                    [primaryMapped] => 
                    [pairedReads] => 405486264
                    [meanInsertSize] => 380.09
                    [meanReadDepth] => 22.09
                    [variantsCalled] => 5641577
                    [variantsFiltered] => 5413022
                    [snpCount] => 3946494
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1471902
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790199
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790199/WSS_25078-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242