Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190104
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 268
[wgsID] => 305
[fwdFile] => WSS_34008_R1.fastq.gz
[fwdMd5] => 48cb33fb70cc4983e8063906c033c1f6
[revFile] => WSS_34008_R2.fastq.gz
[revMd5] => 61694f5d978bbab2a13e1a2b15c75dc2
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664702
[enaRun] => ERR11256493
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 431
[wgsID] => 305
[refGenome] => cf4
[dateSubmitted] => 2023-02-03 10:23:00
[dateCompleted] => 2023-02-04 05:53:00
[bamMd5] => d7f2325f5890ff251b53fe92e2e0e267
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 898597241
[primaryReads] =>
[mappedReads] => 895365446
[primaryMapped] =>
[pairedReads] => 875581444
[meanInsertSize] => 516.86
[meanReadDepth] => 48.11
[variantsCalled] => 6299558
[variantsFiltered] => 5899561
[snpCount] => 4115855
[snpHom] => 1947185
[snpHet] => 2168670
[indelCount] => 1793986
[insHom] => 319633
[delHom] => 442366
[insHet] => 485833
[delHet] => 583637
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21778108
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778108/WSS_34008-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242