Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790784
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 814
                    [wgsID] => 497
                    [fwdFile] => WSS_41354_R1.fastq.gz
                    [fwdMd5] => 6d28166c7be0edfb830482ee8e87f458
                    [revFile] => WSS_41354_R2.fastq.gz
                    [revMd5] => 70177875658a5421acdf995d4bce80ca
                    [rawReads] => 997160402
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028987
                    [enaRun] => ERR13658285
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1665
                    [wgsID] => 497
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-15 11:33:32
                    [dateCompleted] => 2024-08-19 20:15:45
                    [bamMd5] => de76f5fb7ad8698c1b241abb46e8867b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 704463071
                    [primaryReads] => 693525385
                    [mappedReads] => 701279776
                    [primaryMapped] => 690342090
                    [pairedReads] => 671959024
                    [meanInsertSize] => 343.91
                    [meanReadDepth] => 29.91
                    [variantsCalled] => 5945339
                    [variantsFiltered] => 5678543
                    [snpCount] => 4045585
                    [snpHom] => 1933612
                    [snpHet] => 2111973
                    [indelCount] => 1640567
                    [insHom] => 347493
                    [delHom] => 471803
                    [insHet] => 378702
                    [delHet] => 469425
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876991
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876991/WSS_41354-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242