Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790784
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 814
[wgsID] => 497
[fwdFile] => WSS_41354_R1.fastq.gz
[fwdMd5] => 6d28166c7be0edfb830482ee8e87f458
[revFile] => WSS_41354_R2.fastq.gz
[revMd5] => 70177875658a5421acdf995d4bce80ca
[rawReads] => 997160402
[FastqRCS] => 1
[enaExperiment] => ERX13028987
[enaRun] => ERR13658285
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1665
[wgsID] => 497
[refGenome] => cf4
[dateSubmitted] => 2024-08-15 11:33:32
[dateCompleted] => 2024-08-19 20:15:45
[bamMd5] => de76f5fb7ad8698c1b241abb46e8867b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 704463071
[primaryReads] => 693525385
[mappedReads] => 701279776
[primaryMapped] => 690342090
[pairedReads] => 671959024
[meanInsertSize] => 343.91
[meanReadDepth] => 29.91
[variantsCalled] => 5945339
[variantsFiltered] => 5678543
[snpCount] => 4045585
[snpHom] => 1933612
[snpHet] => 2111973
[indelCount] => 1640567
[insHom] => 347493
[delHom] => 471803
[insHet] => 378702
[delHet] => 469425
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876991
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876991/WSS_41354-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242