Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790786
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 816
[wgsID] => 499
[fwdFile] => WSS_41356_R1.fastq.gz
[fwdMd5] => 139787fbadb0404d54550ed0181ea7de
[revFile] => WSS_41356_R2.fastq.gz
[revMd5] => f7a02ff0306969e16d115111f956e08a
[rawReads] => 977736756
[FastqRCS] => 1
[enaExperiment] => ERX13028989
[enaRun] => ERR13658287
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1668
[wgsID] => 499
[refGenome] => cf4
[dateSubmitted] => 2024-08-20 08:23:45
[dateCompleted] => 2024-08-21 12:59:09
[bamMd5] => 903197a28b6787f6e132628c0ba9196d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 969876691
[primaryReads] => 954089951
[mappedReads] => 967947208
[primaryMapped] => 952160468
[pairedReads] => 932301686
[meanInsertSize] => 324.76
[meanReadDepth] => 42.31
[variantsCalled] => 6026755
[variantsFiltered] => 5729730
[snpCount] => 4063000
[snpHom] => 1968364
[snpHet] => 2094636
[indelCount] => 1675069
[insHom] => 353823
[delHom] => 475936
[insHet] => 392645
[delHet] => 482891
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876993
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876993/WSS_41356-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242