Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790786
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 816
                    [wgsID] => 499
                    [fwdFile] => WSS_41356_R1.fastq.gz
                    [fwdMd5] => 139787fbadb0404d54550ed0181ea7de
                    [revFile] => WSS_41356_R2.fastq.gz
                    [revMd5] => f7a02ff0306969e16d115111f956e08a
                    [rawReads] => 977736756
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028989
                    [enaRun] => ERR13658287
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1668
                    [wgsID] => 499
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-20 08:23:45
                    [dateCompleted] => 2024-08-21 12:59:09
                    [bamMd5] => 903197a28b6787f6e132628c0ba9196d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 969876691
                    [primaryReads] => 954089951
                    [mappedReads] => 967947208
                    [primaryMapped] => 952160468
                    [pairedReads] => 932301686
                    [meanInsertSize] => 324.76
                    [meanReadDepth] => 42.31
                    [variantsCalled] => 6026755
                    [variantsFiltered] => 5729730
                    [snpCount] => 4063000
                    [snpHom] => 1968364
                    [snpHet] => 2094636
                    [indelCount] => 1675069
                    [insHom] => 353823
                    [delHom] => 475936
                    [insHet] => 392645
                    [delHet] => 482891
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876993
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876993/WSS_41356-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242