Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790787
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 817
                    [wgsID] => 500
                    [fwdFile] => WSS_41361_R1.fastq.gz
                    [fwdMd5] => f9b019acef4be7a3411f5b6a23bf78b9
                    [revFile] => WSS_41361_R2.fastq.gz
                    [revMd5] => 75388b51e8a33c546ac16f3d7244760f
                    [rawReads] => 1023573492
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028990
                    [enaRun] => ERR13658288
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1669
                    [wgsID] => 500
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-20 08:22:20
                    [dateCompleted] => 2024-08-21 13:52:28
                    [bamMd5] => b4b75ce22123760437125fc9bf0e6667
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1019632488
                    [primaryReads] => 998102432
                    [mappedReads] => 1017664327
                    [primaryMapped] => 996134271
                    [pairedReads] => 972428858
                    [meanInsertSize] => 320.82
                    [meanReadDepth] => 44.02
                    [variantsCalled] => 6024552
                    [variantsFiltered] => 5723184
                    [snpCount] => 4049177
                    [snpHom] => 1980421
                    [snpHet] => 2068756
                    [indelCount] => 1682430
                    [insHom] => 353747
                    [delHom] => 478336
                    [insHet] => 396366
                    [delHet] => 484656
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876994
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876994/WSS_41361-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242