Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790787
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 817
[wgsID] => 500
[fwdFile] => WSS_41361_R1.fastq.gz
[fwdMd5] => f9b019acef4be7a3411f5b6a23bf78b9
[revFile] => WSS_41361_R2.fastq.gz
[revMd5] => 75388b51e8a33c546ac16f3d7244760f
[rawReads] => 1023573492
[FastqRCS] => 1
[enaExperiment] => ERX13028990
[enaRun] => ERR13658288
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1669
[wgsID] => 500
[refGenome] => cf4
[dateSubmitted] => 2024-08-20 08:22:20
[dateCompleted] => 2024-08-21 13:52:28
[bamMd5] => b4b75ce22123760437125fc9bf0e6667
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1019632488
[primaryReads] => 998102432
[mappedReads] => 1017664327
[primaryMapped] => 996134271
[pairedReads] => 972428858
[meanInsertSize] => 320.82
[meanReadDepth] => 44.02
[variantsCalled] => 6024552
[variantsFiltered] => 5723184
[snpCount] => 4049177
[snpHom] => 1980421
[snpHet] => 2068756
[indelCount] => 1682430
[insHom] => 353747
[delHom] => 478336
[insHet] => 396366
[delHet] => 484656
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876994
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876994/WSS_41361-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242