Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190107
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 115
                    [wgsID] => 84
                    [fwdFile] => BaH_27933_R1.fastq.gz
                    [fwdMd5] => 40f7b8e6395cb62abc86143f1c35d37a
                    [revFile] => BaH_27933_R2.fastq.gz
                    [revMd5] => 78f18fc64dacd4fb55feeab0d64b86cc
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648177
                    [enaRun] => ERR11223848
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 59
                    [wgsID] => 84
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-10 20:49:00
                    [dateCompleted] => 2022-10-11 14:17:00
                    [bamMd5] => 62075450378a524922567c473c27b47c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1010253737
                    [primaryReads] => 
                    [mappedReads] => 1006082723
                    [primaryMapped] => 
                    [pairedReads] => 984588660
                    [meanInsertSize] => 464.92
                    [meanReadDepth] => 44.04
                    [variantsCalled] => 6178396
                    [variantsFiltered] => 5774636
                    [snpCount] => 4009135
                    [snpHom] => 2093294
                    [snpHet] => 1915841
                    [indelCount] => 1775908
                    [insHom] => 332928
                    [delHom] => 459973
                    [insHet] => 458887
                    [delHet] => 558683
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775553
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775553/BaH_27933-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242