Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790788
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 818
                    [wgsID] => 501
                    [fwdFile] => WSS_41362_R1.fastq.gz
                    [fwdMd5] => 6ca75b658504a69e70346eb4e55707b2
                    [revFile] => WSS_41362_R2.fastq.gz
                    [revMd5] => 2564c1e546266d842bbbc55991b34df7
                    [rawReads] => 936964926
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028991
                    [enaRun] => ERR13658289
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1666
                    [wgsID] => 501
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-20 08:26:35
                    [dateCompleted] => 2024-08-21 12:44:00
                    [bamMd5] => de9b48523dbd2d60a1dedf45741d330f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 908697461
                    [primaryReads] => 888634673
                    [mappedReads] => 907052228
                    [primaryMapped] => 886989440
                    [pairedReads] => 866355908
                    [meanInsertSize] => 312.66
                    [meanReadDepth] => 39.57
                    [variantsCalled] => 5923332
                    [variantsFiltered] => 5644741
                    [snpCount] => 4008021
                    [snpHom] => 2042854
                    [snpHet] => 1965167
                    [indelCount] => 1644355
                    [insHom] => 370992
                    [delHom] => 497346
                    [insHet] => 360379
                    [delHet] => 442719
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876995
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876995/WSS_41362-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242