Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790788
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 818
[wgsID] => 501
[fwdFile] => WSS_41362_R1.fastq.gz
[fwdMd5] => 6ca75b658504a69e70346eb4e55707b2
[revFile] => WSS_41362_R2.fastq.gz
[revMd5] => 2564c1e546266d842bbbc55991b34df7
[rawReads] => 936964926
[FastqRCS] => 1
[enaExperiment] => ERX13028991
[enaRun] => ERR13658289
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1666
[wgsID] => 501
[refGenome] => cf4
[dateSubmitted] => 2024-08-20 08:26:35
[dateCompleted] => 2024-08-21 12:44:00
[bamMd5] => de9b48523dbd2d60a1dedf45741d330f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 908697461
[primaryReads] => 888634673
[mappedReads] => 907052228
[primaryMapped] => 886989440
[pairedReads] => 866355908
[meanInsertSize] => 312.66
[meanReadDepth] => 39.57
[variantsCalled] => 5923332
[variantsFiltered] => 5644741
[snpCount] => 4008021
[snpHom] => 2042854
[snpHet] => 1965167
[indelCount] => 1644355
[insHom] => 370992
[delHom] => 497346
[insHet] => 360379
[delHet] => 442719
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876995
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876995/WSS_41362-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242