Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790789
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 819
                    [wgsID] => 502
                    [fwdFile] => WSS_41366_R1.fastq.gz
                    [fwdMd5] => 90406a4460a7081dac8065b571a4c987
                    [revFile] => WSS_41366_R2.fastq.gz
                    [revMd5] => 5f341865a9de16f03f69f07853858f54
                    [rawReads] => 902547178
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028992
                    [enaRun] => ERR13658290
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1667
                    [wgsID] => 502
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-20 08:16:32
                    [dateCompleted] => 2024-08-21 12:47:42
                    [bamMd5] => 6a76034a4f3e4827ba8bfa85f56e0387
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 882394648
                    [primaryReads] => 867365969
                    [mappedReads] => 880545373
                    [primaryMapped] => 865516694
                    [pairedReads] => 845614512
                    [meanInsertSize] => 339.24
                    [meanReadDepth] => 39.95
                    [variantsCalled] => 6079069
                    [variantsFiltered] => 5799775
                    [snpCount] => 4116781
                    [snpHom] => 1952016
                    [snpHet] => 2164765
                    [indelCount] => 1691439
                    [insHom] => 352460
                    [delHom] => 474976
                    [insHet] => 400922
                    [delHet] => 493960
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876996
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876996/WSS_41366-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242