Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790789
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 819
[wgsID] => 502
[fwdFile] => WSS_41366_R1.fastq.gz
[fwdMd5] => 90406a4460a7081dac8065b571a4c987
[revFile] => WSS_41366_R2.fastq.gz
[revMd5] => 5f341865a9de16f03f69f07853858f54
[rawReads] => 902547178
[FastqRCS] => 1
[enaExperiment] => ERX13028992
[enaRun] => ERR13658290
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1667
[wgsID] => 502
[refGenome] => cf4
[dateSubmitted] => 2024-08-20 08:16:32
[dateCompleted] => 2024-08-21 12:47:42
[bamMd5] => 6a76034a4f3e4827ba8bfa85f56e0387
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 882394648
[primaryReads] => 867365969
[mappedReads] => 880545373
[primaryMapped] => 865516694
[pairedReads] => 845614512
[meanInsertSize] => 339.24
[meanReadDepth] => 39.95
[variantsCalled] => 6079069
[variantsFiltered] => 5799775
[snpCount] => 4116781
[snpHom] => 1952016
[snpHet] => 2164765
[indelCount] => 1691439
[insHom] => 352460
[delHom] => 474976
[insHet] => 400922
[delHet] => 493960
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876996
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876996/WSS_41366-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242