Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790790
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 820
[wgsID] => 503
[fwdFile] => WSS_41384_R1.fastq.gz
[fwdMd5] => ca7f4173293826602e28c6707dbb5a97
[revFile] => WSS_41384_R2.fastq.gz
[revMd5] => 635d3c14787c856229df5dab25fff2a4
[rawReads] => 1114904534
[FastqRCS] => 1
[enaExperiment] => ERX13028993
[enaRun] => ERR13658291
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1670
[wgsID] => 503
[refGenome] => cf4
[dateSubmitted] => 2024-08-21 12:22:54
[dateCompleted] => 2024-08-22 09:04:48
[bamMd5] => 3bb316035b21aea5e2ece2b97b3adeda
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1106724728
[primaryReads] => 1086388925
[mappedReads] => 1104444364
[primaryMapped] => 1084108561
[pairedReads] => 1057584728
[meanInsertSize] => 338.57
[meanReadDepth] => 48.51
[variantsCalled] => 6148968
[variantsFiltered] => 5820534
[snpCount] => 4119400
[snpHom] => 1969955
[snpHet] => 2149445
[indelCount] => 1710043
[insHom] => 353575
[delHom] => 477632
[insHet] => 409142
[delHet] => 502009
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876997
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876997/WSS_41384-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242