Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790790
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 820
                    [wgsID] => 503
                    [fwdFile] => WSS_41384_R1.fastq.gz
                    [fwdMd5] => ca7f4173293826602e28c6707dbb5a97
                    [revFile] => WSS_41384_R2.fastq.gz
                    [revMd5] => 635d3c14787c856229df5dab25fff2a4
                    [rawReads] => 1114904534
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028993
                    [enaRun] => ERR13658291
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1670
                    [wgsID] => 503
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-21 12:22:54
                    [dateCompleted] => 2024-08-22 09:04:48
                    [bamMd5] => 3bb316035b21aea5e2ece2b97b3adeda
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1106724728
                    [primaryReads] => 1086388925
                    [mappedReads] => 1104444364
                    [primaryMapped] => 1084108561
                    [pairedReads] => 1057584728
                    [meanInsertSize] => 338.57
                    [meanReadDepth] => 48.51
                    [variantsCalled] => 6148968
                    [variantsFiltered] => 5820534
                    [snpCount] => 4119400
                    [snpHom] => 1969955
                    [snpHet] => 2149445
                    [indelCount] => 1710043
                    [insHom] => 353575
                    [delHom] => 477632
                    [insHet] => 409142
                    [delHet] => 502009
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876997
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876997/WSS_41384-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242