Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790791
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 821
[wgsID] => 504
[fwdFile] => WSS_41385_R1.fastq.gz
[fwdMd5] => 39e310fddcc251d02c0d6637593e47fe
[revFile] => WSS_41385_R2.fastq.gz
[revMd5] => 587b14b3c37a4bb98ba4cb4ef93204e1
[rawReads] => 974947534
[FastqRCS] => 1
[enaExperiment] => ERX13028994
[enaRun] => ERR13658292
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1671
[wgsID] => 504
[refGenome] => cf4
[dateSubmitted] => 2024-08-21 12:23:28
[dateCompleted] => 2024-08-22 08:30:31
[bamMd5] => da8700c7d092be7c28132ffef7c2a432
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 972519383
[primaryReads] => 960342179
[mappedReads] => 970437259
[primaryMapped] => 958260055
[pairedReads] => 936590312
[meanInsertSize] => 374.23
[meanReadDepth] => 42.52
[variantsCalled] => 6029786
[variantsFiltered] => 5721609
[snpCount] => 4054032
[snpHom] => 1951845
[snpHet] => 2102187
[indelCount] => 1675907
[insHom] => 352260
[delHom] => 476649
[insHet] => 395275
[delHet] => 481980
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876998
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876998/WSS_41385-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242