Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790791
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 821
                    [wgsID] => 504
                    [fwdFile] => WSS_41385_R1.fastq.gz
                    [fwdMd5] => 39e310fddcc251d02c0d6637593e47fe
                    [revFile] => WSS_41385_R2.fastq.gz
                    [revMd5] => 587b14b3c37a4bb98ba4cb4ef93204e1
                    [rawReads] => 974947534
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028994
                    [enaRun] => ERR13658292
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1671
                    [wgsID] => 504
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-21 12:23:28
                    [dateCompleted] => 2024-08-22 08:30:31
                    [bamMd5] => da8700c7d092be7c28132ffef7c2a432
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 972519383
                    [primaryReads] => 960342179
                    [mappedReads] => 970437259
                    [primaryMapped] => 958260055
                    [pairedReads] => 936590312
                    [meanInsertSize] => 374.23
                    [meanReadDepth] => 42.52
                    [variantsCalled] => 6029786
                    [variantsFiltered] => 5721609
                    [snpCount] => 4054032
                    [snpHom] => 1951845
                    [snpHet] => 2102187
                    [indelCount] => 1675907
                    [insHom] => 352260
                    [delHom] => 476649
                    [insHet] => 395275
                    [delHet] => 481980
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876998
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876998/WSS_41385-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242