Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790792
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 822
[wgsID] => 505
[fwdFile] => WSS_41386_R1.fastq.gz
[fwdMd5] => dae8d3c1adac16e110a91446d2bb39be
[revFile] => WSS_41386_R2.fastq.gz
[revMd5] => 4aabf2e6c85ab311cd8079f3c80dbe45
[rawReads] => 968176522
[FastqRCS] => 1
[enaExperiment] => ERX13028995
[enaRun] => ERR13658293
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1672
[wgsID] => 505
[refGenome] => cf4
[dateSubmitted] => 2024-08-21 12:23:52
[dateCompleted] => 2024-08-22 05:56:47
[bamMd5] => fbc5626e7743763f9894125c6dc6d5de
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 971748232
[primaryReads] => 960240449
[mappedReads] => 969691458
[primaryMapped] => 958183675
[pairedReads] => 937163822
[meanInsertSize] => 364.73
[meanReadDepth] => 43.36
[variantsCalled] => 5903005
[variantsFiltered] => 5608077
[snpCount] => 3959963
[snpHom] => 2083538
[snpHet] => 1876425
[indelCount] => 1655787
[insHom] => 376485
[delHom] => 503753
[insHet] => 361022
[delHet] => 442847
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24876999
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876999/WSS_41386-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242