Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790792
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 822
                    [wgsID] => 505
                    [fwdFile] => WSS_41386_R1.fastq.gz
                    [fwdMd5] => dae8d3c1adac16e110a91446d2bb39be
                    [revFile] => WSS_41386_R2.fastq.gz
                    [revMd5] => 4aabf2e6c85ab311cd8079f3c80dbe45
                    [rawReads] => 968176522
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028995
                    [enaRun] => ERR13658293
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1672
                    [wgsID] => 505
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-21 12:23:52
                    [dateCompleted] => 2024-08-22 05:56:47
                    [bamMd5] => fbc5626e7743763f9894125c6dc6d5de
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 971748232
                    [primaryReads] => 960240449
                    [mappedReads] => 969691458
                    [primaryMapped] => 958183675
                    [pairedReads] => 937163822
                    [meanInsertSize] => 364.73
                    [meanReadDepth] => 43.36
                    [variantsCalled] => 5903005
                    [variantsFiltered] => 5608077
                    [snpCount] => 3959963
                    [snpHom] => 2083538
                    [snpHet] => 1876425
                    [indelCount] => 1655787
                    [insHom] => 376485
                    [delHom] => 503753
                    [insHet] => 361022
                    [delHet] => 442847
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876999
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876999/WSS_41386-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242