Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790793
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 823
[wgsID] => 506
[fwdFile] => WSS_41387_R1.fastq.gz
[fwdMd5] => bd4401e26e03b2a67f40ca04b0cc8736
[revFile] => WSS_41387_R2.fastq.gz
[revMd5] => 2f7e5b86866c7eba2fbcdc6c241661fd
[rawReads] => 910918064
[FastqRCS] => 1
[enaExperiment] => ERX13028996
[enaRun] => ERR13658294
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1673
[wgsID] => 506
[refGenome] => cf4
[dateSubmitted] => 2024-08-21 12:24:44
[dateCompleted] => 2024-08-22 04:53:26
[bamMd5] => 92d646d1695a05871b869559455eb56c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 915915715
[primaryReads] => 902850428
[mappedReads] => 914185115
[primaryMapped] => 901119828
[pairedReads] => 880934742
[meanInsertSize] => 364.29
[meanReadDepth] => 41.43
[variantsCalled] => 6010936
[variantsFiltered] => 5721299
[snpCount] => 4049999
[snpHom] => 1967145
[snpHet] => 2082854
[indelCount] => 1679459
[insHom] => 351599
[delHom] => 474907
[insHet] => 397293
[delHet] => 486419
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ24877000
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24877000/WSS_41387-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242