Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790793
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 823
                    [wgsID] => 506
                    [fwdFile] => WSS_41387_R1.fastq.gz
                    [fwdMd5] => bd4401e26e03b2a67f40ca04b0cc8736
                    [revFile] => WSS_41387_R2.fastq.gz
                    [revMd5] => 2f7e5b86866c7eba2fbcdc6c241661fd
                    [rawReads] => 910918064
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028996
                    [enaRun] => ERR13658294
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1673
                    [wgsID] => 506
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-21 12:24:44
                    [dateCompleted] => 2024-08-22 04:53:26
                    [bamMd5] => 92d646d1695a05871b869559455eb56c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 915915715
                    [primaryReads] => 902850428
                    [mappedReads] => 914185115
                    [primaryMapped] => 901119828
                    [pairedReads] => 880934742
                    [meanInsertSize] => 364.29
                    [meanReadDepth] => 41.43
                    [variantsCalled] => 6010936
                    [variantsFiltered] => 5721299
                    [snpCount] => 4049999
                    [snpHom] => 1967145
                    [snpHet] => 2082854
                    [indelCount] => 1679459
                    [insHom] => 351599
                    [delHom] => 474907
                    [insHet] => 397293
                    [delHet] => 486419
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24877000
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24877000/WSS_41387-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242