Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190202
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 116
[wgsID] => 146
[fwdFile] => BaH_28502_R1.fastq.gz
[fwdMd5] => 7784bca0511b41c117d8e68c83563a8f
[revFile] => BaH_28502_R2.fastq.gz
[revMd5] => b98fee0889d0726c251b1b7b765ec666
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10686609
[enaRun] => ERR11278909
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 319
[wgsID] => 146
[refGenome] => cf4
[dateSubmitted] => 2023-03-16 12:18:00
[dateCompleted] => 2023-03-17 05:56:00
[bamMd5] => e911b66537cb9cdb30b0c9ec17b3b730
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 918145581
[primaryReads] =>
[mappedReads] => 916189193
[primaryMapped] =>
[pairedReads] => 899785508
[meanInsertSize] => 466.63
[meanReadDepth] => 40.24
[variantsCalled] => 6266085
[variantsFiltered] => 5896864
[snpCount] => 4108651
[snpHom] =>
[snpHet] =>
[indelCount] => 1798513
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21782982
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782982/BaH_28502-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242