Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189963
[wgsExptID] => 4
[Batch] => Oxford_3
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq 1000
[ReadType] => 100bp:PAIRED
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 4
[DateSubmitted] =>
[FastqID] => 454
[wgsID] => 92
[fwdFile] => LR_26102_R1.fastq.gz
[fwdMd5] => 5288008d9d977d72dfacc8844210c336
[revFile] => LR_26102_R2.fastq.gz
[revMd5] => 3bc0695842ced46dbff2c24c1f711601
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX9982476
[enaRun] => ERR10459216
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 229
[wgsID] => 92
[refGenome] => cf4
[dateSubmitted] => 2022-10-27 17:38:00
[dateCompleted] => 2022-10-28 07:40:00
[bamMd5] => 0180acd75719d0e4b79e015e38ea2152
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 795298144
[primaryReads] =>
[mappedReads] => 789512199
[primaryMapped] =>
[pairedReads] => 771823668
[meanInsertSize] => 390.77
[meanReadDepth] => 29.56
[variantsCalled] => 6556148
[variantsFiltered] => 6208176
[snpCount] => 4433421
[snpHom] =>
[snpHet] =>
[indelCount] => 1785941
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21790195
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790195/XB_26102-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242