Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190195
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 273
[wgsID] => 279
[fwdFile] => XB_33956_R1.fastq.gz
[fwdMd5] => 2dcfb7f5317bba610226ff8b779d92f4
[revFile] => XB_33956_R2.fastq.gz
[revMd5] => a62c9f2a3a16e4d12de6fbefd6023902
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX9982674
[enaRun] => ERR10460384
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 230
[wgsID] => 279
[refGenome] => cf4
[dateSubmitted] => 2022-10-27 17:39:00
[dateCompleted] => 2023-03-30 09:42:00
[bamMd5] => c9c1f2cb29bef4c2e750df4b0df5f71b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 944904413
[primaryReads] =>
[mappedReads] => 904654821
[primaryMapped] =>
[pairedReads] => 885676240
[meanInsertSize] => 484.69
[meanReadDepth] => 46.13
[variantsCalled] => 6845300
[variantsFiltered] => 6454035
[snpCount] => 4520079
[snpHom] => 1539138
[snpHet] => 2980941
[indelCount] => 1947585
[insHom] => 236948
[delHom] => 336335
[insHet] => 646317
[delHet] => 781875
[genomicsDB] => 0
[varsity] => 0
[enaAnalysis] => ERZ21780970
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780970/XB_33956-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242