Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190195
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 273
                    [wgsID] => 279
                    [fwdFile] => XB_33956_R1.fastq.gz
                    [fwdMd5] => 2dcfb7f5317bba610226ff8b779d92f4
                    [revFile] => XB_33956_R2.fastq.gz
                    [revMd5] => a62c9f2a3a16e4d12de6fbefd6023902
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX9982674
                    [enaRun] => ERR10460384
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 230
                    [wgsID] => 279
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-27 17:39:00
                    [dateCompleted] => 2023-03-30 09:42:00
                    [bamMd5] => c9c1f2cb29bef4c2e750df4b0df5f71b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 944904413
                    [primaryReads] => 
                    [mappedReads] => 904654821
                    [primaryMapped] => 
                    [pairedReads] => 885676240
                    [meanInsertSize] => 484.69
                    [meanReadDepth] => 46.13
                    [variantsCalled] => 6845300
                    [variantsFiltered] => 6454035
                    [snpCount] => 4520079
                    [snpHom] => 1539138
                    [snpHet] => 2980941
                    [indelCount] => 1947585
                    [insHom] => 236948
                    [delHom] => 336335
                    [insHet] => 646317
                    [delHet] => 781875
                    [genomicsDB] => 0
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780970
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780970/XB_33956-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242