Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296810
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 635
                    [wgsID] => 12
                    [fwdFile] => XB_36092_R1.fastq.gz
                    [fwdMd5] => 4f5f099e18b50a3d6876f2aa482b9782
                    [revFile] => XB_36092_R2.fastq.gz
                    [revMd5] => 2c8ecdb4818417cd59ef2c79cf19b6c7
                    [rawReads] => 1200435820
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830380
                    [enaRun] => ERR11423072
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 32
                    [wgsID] => 12
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-11 16:13:00
                    [dateCompleted] => 2023-07-19 01:02:00
                    [bamMd5] => 1134c8b858418d585326c14674d52808
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1210387902
                    [primaryReads] => 
                    [mappedReads] => 1208531661
                    [primaryMapped] => 
                    [pairedReads] => 1182355734
                    [meanInsertSize] => 368.52
                    [meanReadDepth] => 57.41
                    [variantsCalled] => 6822551
                    [variantsFiltered] => 6381364
                    [snpCount] => 4480319
                    [snpHom] => 1910663
                    [snpHet] => 2569656
                    [indelCount] => 1913119
                    [insHom] => 308577
                    [delHom] => 429527
                    [insHet] => 555781
                    [delHet] => 665228
                    [genomicsDB] => 0
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659505
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659505/XB_36092-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242