Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296811
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 644
[wgsID] => 21
[fwdFile] => XB_37274_R1.fastq.gz
[fwdMd5] => 40af7faa896e10f196c1b7ffa431337b
[revFile] => XB_37274_R2.fastq.gz
[revMd5] => 591c9a833d965c657f6224d6edd451d4
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10830389
[enaRun] => ERR11423081
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 33
[wgsID] => 21
[refGenome] => cf4
[dateSubmitted] => 2023-05-11 00:00:00
[dateCompleted] => 2023-05-15 10:12:00
[bamMd5] => a1686db34c74885004edc97abc2998d3
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 562600286
[primaryReads] =>
[mappedReads] => 561348482
[primaryMapped] =>
[pairedReads] => 546147624
[meanInsertSize] => 338.71
[meanReadDepth] => 26.72
[variantsCalled] => 6839147
[variantsFiltered] => 6527569
[snpCount] => 4611962
[snpHom] => 1546052
[snpHet] => 3065910
[indelCount] => 1927950
[insHom] => 244939
[delHom] => 353961
[insHet] => 613260
[delHet] => 762629
[genomicsDB] => 0
[varsity] => 0
[enaAnalysis] => ERZ21659506
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659506/XB_37274-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242