Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190004
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 120
[wgsID] => 62
[fwdFile] => BaH_32778_R1.fastq.gz
[fwdMd5] => a28dc357b78c1828aa32982558096597
[revFile] => BaH_32778_R2.fastq.gz
[revMd5] => 3ee7bb2d1a7b2867828963eecfb650bc
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019032
[enaRun] => ERR7448278
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 99
[wgsID] => 62
[refGenome] => cf4
[dateSubmitted] => 2022-09-09 11:08:00
[dateCompleted] => 2022-09-10 05:19:00
[bamMd5] => 9dd5bf08f2715bba9c5d7569a9b42e57
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1012908720
[primaryReads] =>
[mappedReads] => 988621251
[primaryMapped] =>
[pairedReads] => 969702004
[meanInsertSize] => 460.27
[meanReadDepth] => 47.35
[variantsCalled] => 6112389
[variantsFiltered] => 5721472
[snpCount] => 3967104
[snpHom] => 2127965
[snpHet] => 1839139
[indelCount] => 1764219
[insHom] => 332428
[delHom] => 463301
[insHet] => 450637
[delHet] => 550991
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659977
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659977/BaH_32778-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242