Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190004
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 120
                    [wgsID] => 62
                    [fwdFile] => BaH_32778_R1.fastq.gz
                    [fwdMd5] => a28dc357b78c1828aa32982558096597
                    [revFile] => BaH_32778_R2.fastq.gz
                    [revMd5] => 3ee7bb2d1a7b2867828963eecfb650bc
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019032
                    [enaRun] => ERR7448278
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 99
                    [wgsID] => 62
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-09 11:08:00
                    [dateCompleted] => 2022-09-10 05:19:00
                    [bamMd5] => 9dd5bf08f2715bba9c5d7569a9b42e57
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1012908720
                    [primaryReads] => 
                    [mappedReads] => 988621251
                    [primaryMapped] => 
                    [pairedReads] => 969702004
                    [meanInsertSize] => 460.27
                    [meanReadDepth] => 47.35
                    [variantsCalled] => 6112389
                    [variantsFiltered] => 5721472
                    [snpCount] => 3967104
                    [snpHom] => 2127965
                    [snpHet] => 1839139
                    [indelCount] => 1764219
                    [insHom] => 332428
                    [delHom] => 463301
                    [insHet] => 450637
                    [delHet] => 550991
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659977
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659977/BaH_32778-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242