Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189993
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 121
[wgsID] => 63
[fwdFile] => BaH_33423_R1.fastq.gz
[fwdMd5] => facbb8ae3594927c6f60ac3c018425b2
[revFile] => BaH_33423_R2.fastq.gz
[revMd5] => f2991cbf680625a4832c5ca7b731d864
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019021
[enaRun] => ERR7448267
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 88
[wgsID] => 63
[refGenome] => cf4
[dateSubmitted] => 2022-09-06 13:14:00
[dateCompleted] => 2022-09-07 08:48:00
[bamMd5] => 0d8f48b758a84efcedd7430558426f5a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 989062731
[primaryReads] =>
[mappedReads] => 986449711
[primaryMapped] =>
[pairedReads] => 967666916
[meanInsertSize] => 520.79
[meanReadDepth] => 48.08
[variantsCalled] => 5972346
[variantsFiltered] => 5596773
[snpCount] => 3879953
[snpHom] => 2183311
[snpHet] => 1696642
[indelCount] => 1725780
[insHom] => 346914
[delHom] => 480912
[insHet] => 415021
[delHet] => 512471
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659978
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659978/BaH_33423-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242