Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189993
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 121
                    [wgsID] => 63
                    [fwdFile] => BaH_33423_R1.fastq.gz
                    [fwdMd5] => facbb8ae3594927c6f60ac3c018425b2
                    [revFile] => BaH_33423_R2.fastq.gz
                    [revMd5] => f2991cbf680625a4832c5ca7b731d864
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019021
                    [enaRun] => ERR7448267
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 88
                    [wgsID] => 63
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-06 13:14:00
                    [dateCompleted] => 2022-09-07 08:48:00
                    [bamMd5] => 0d8f48b758a84efcedd7430558426f5a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 989062731
                    [primaryReads] => 
                    [mappedReads] => 986449711
                    [primaryMapped] => 
                    [pairedReads] => 967666916
                    [meanInsertSize] => 520.79
                    [meanReadDepth] => 48.08
                    [variantsCalled] => 5972346
                    [variantsFiltered] => 5596773
                    [snpCount] => 3879953
                    [snpHom] => 2183311
                    [snpHet] => 1696642
                    [indelCount] => 1725780
                    [insHom] => 346914
                    [delHom] => 480912
                    [insHet] => 415021
                    [delHet] => 512471
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659978
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659978/BaH_33423-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242