Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189994
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 122
[wgsID] => 64
[fwdFile] => BaH_33454_R1.fastq.gz
[fwdMd5] => fef6261d3725bee8f5e62cbcb9172af4
[revFile] => BaH_33454_R2.fastq.gz
[revMd5] => 15442a36975d41ec95eac2ad40f35c4f
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019022
[enaRun] => ERR7448268
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 89
[wgsID] => 64
[refGenome] => cf4
[dateSubmitted] => 2022-09-14 16:22:00
[dateCompleted] => 2022-09-15 15:16:00
[bamMd5] => 538d63c125ccbb224980bfc2baf70003
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1014723126
[primaryReads] =>
[mappedReads] => 1011552427
[primaryMapped] =>
[pairedReads] => 992306538
[meanInsertSize] => 488.31
[meanReadDepth] => 48.39
[variantsCalled] => 5904120
[variantsFiltered] => 5512569
[snpCount] => 3823149
[snpHom] => 2271346
[snpHet] => 1551803
[indelCount] => 1697954
[insHom] => 362291
[delHom] => 500747
[insHet] => 388215
[delHet] => 473541
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659979
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659979/BaH_33454-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242