Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190006
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 124
[wgsID] => 67
[fwdFile] => BaH_35632_R1.fastq.gz
[fwdMd5] => 417177d48e2d17cbabfa638cef56d316
[revFile] => BaH_35632_R2.fastq.gz
[revMd5] => b8b0a799b01430e7cbf3b1e2bbf907a4
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019034
[enaRun] => ERR7448280
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 101
[wgsID] => 67
[refGenome] => cf4
[dateSubmitted] => 2022-09-08 13:52:00
[dateCompleted] => 2022-09-09 09:08:00
[bamMd5] => 94db4fb554ced2fb0f796e03edbf30cd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 960192591
[primaryReads] =>
[mappedReads] => 824681775
[primaryMapped] =>
[pairedReads] => 808554698
[meanInsertSize] => 449.75
[meanReadDepth] => 37.47
[variantsCalled] => 6235307
[variantsFiltered] => 5913663
[snpCount] => 4117027
[snpHom] => 1966404
[snpHet] => 2150623
[indelCount] => 1806698
[insHom] => 307021
[delHom] => 432401
[insHet] => 493797
[delHet] => 609917
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659980
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659980/BaH_35632-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242