Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190007
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 125
[wgsID] => 68
[fwdFile] => BaH_35639_R1.fastq.gz
[fwdMd5] => fab876e39e8fcf87890e086e3ea91ba8
[revFile] => BaH_35639_R2.fastq.gz
[revMd5] => e2f2afa5d5ef492a48609e3313a0516a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019035
[enaRun] => ERR7448281
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 102
[wgsID] => 68
[refGenome] => cf4
[dateSubmitted] => 2022-09-08 13:51:00
[dateCompleted] => 2022-09-09 09:16:00
[bamMd5] => 643390cd8f8bb52030ae7448ef5567f1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1003218347
[primaryReads] =>
[mappedReads] => 975907515
[primaryMapped] =>
[pairedReads] => 956733024
[meanInsertSize] => 442.50
[meanReadDepth] => 48.36
[variantsCalled] => 6116651
[variantsFiltered] => 5717151
[snpCount] => 3964792
[snpHom] => 2105479
[snpHet] => 1859313
[indelCount] => 1762398
[insHom] => 330286
[delHom] => 460034
[insHet] => 451366
[delHet] => 553805
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659981
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659981/BaH_35639-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242