Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190007
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 125
                    [wgsID] => 68
                    [fwdFile] => BaH_35639_R1.fastq.gz
                    [fwdMd5] => fab876e39e8fcf87890e086e3ea91ba8
                    [revFile] => BaH_35639_R2.fastq.gz
                    [revMd5] => e2f2afa5d5ef492a48609e3313a0516a
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019035
                    [enaRun] => ERR7448281
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 102
                    [wgsID] => 68
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-08 13:51:00
                    [dateCompleted] => 2022-09-09 09:16:00
                    [bamMd5] => 643390cd8f8bb52030ae7448ef5567f1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1003218347
                    [primaryReads] => 
                    [mappedReads] => 975907515
                    [primaryMapped] => 
                    [pairedReads] => 956733024
                    [meanInsertSize] => 442.50
                    [meanReadDepth] => 48.36
                    [variantsCalled] => 6116651
                    [variantsFiltered] => 5717151
                    [snpCount] => 3964792
                    [snpHom] => 2105479
                    [snpHet] => 1859313
                    [indelCount] => 1762398
                    [insHom] => 330286
                    [delHom] => 460034
                    [insHet] => 451366
                    [delHet] => 553805
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659981
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659981/BaH_35639-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242