Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365194
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 487
[wgsID] => 314
[fwdFile] => BC_20042_R1.fastq.gz
[fwdMd5] => a497257528f9d9537dd12adb60d99477
[revFile] => BC_20042_R2.fastq.gz
[revMd5] => f3bdbd54c783e1c9d822bd7eaab28b2d
[rawReads] => 813055474
[FastqRCS] => 1
[enaExperiment] => ERX10255904
[enaRun] => ERR10807437
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 488
[wgsID] => 314
[refGenome] => cf4
[dateSubmitted] => 2023-07-20 15:38:00
[dateCompleted] => 2023-07-21 20:44:00
[bamMd5] => 630d5a902b37ebd473bd332ecf14167f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 715668598
[primaryReads] =>
[mappedReads] => 713166842
[primaryMapped] =>
[pairedReads] => 694041678
[meanInsertSize] => 412.41
[meanReadDepth] => 31.82
[variantsCalled] => 6603642
[variantsFiltered] => 6299578
[snpCount] => 4414534
[snpHom] => 1699686
[snpHet] => 2714848
[indelCount] => 1896835
[insHom] => 300100
[delHom] => 414700
[insHet] => 561974
[delHet] => 669542
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617036
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617036/BC_20042-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242