Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189960
                    [wgsExptID] => 4
                    [Batch] => Oxford_3
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq 1000
                    [ReadType] => 100bp:PAIRED
                    [LibraryPrep] => WTCHG, PCR FREE
                    [PcrFree] => Y
                    [SampleCount] => 4
                    [DateSubmitted] => 
                    [FastqID] => 453
                    [wgsID] => 91
                    [fwdFile] => BC_24093_R1.fastq.gz
                    [fwdMd5] => a48c8f63c85e7f0243d838d97ed096ff
                    [revFile] => BC_24093_R2.fastq.gz
                    [revMd5] => 9fb4a588d8f6c8dcbaa99ab5667771f6
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10158671
                    [enaRun] => ERR10691964
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 164
                    [wgsID] => 91
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-14 12:15:00
                    [dateCompleted] => 2022-10-17 15:16:00
                    [bamMd5] => 58368fd899c65de6590d80d8426c5b27
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 731824874
                    [primaryReads] => 
                    [mappedReads] => 726071309
                    [primaryMapped] => 
                    [pairedReads] => 695701896
                    [meanInsertSize] => 383.26
                    [meanReadDepth] => 27.82
                    [variantsCalled] => 6237277
                    [variantsFiltered] => 5903618
                    [snpCount] => 4201361
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1711615
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790192
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790192/BC_24093-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242