Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365197
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 490
[wgsID] => 317
[fwdFile] => BC_26499_R1.fastq.gz
[fwdMd5] => 3800304fec4b04dbc3ae1f8ca94991be
[revFile] => BC_26499_R2.fastq.gz
[revMd5] => ed7c3f327dac771e59f88106c84c04bd
[rawReads] => 499324804
[FastqRCS] => 1
[enaExperiment] => ERX10255907
[enaRun] => ERR10807440
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 491
[wgsID] => 317
[refGenome] => cf4
[dateSubmitted] => 2023-07-20 15:39:00
[dateCompleted] => 2023-07-21 05:37:00
[bamMd5] => 903d4107467588ffde7ffcd833d5f981
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 454257207
[primaryReads] =>
[mappedReads] => 452502594
[primaryMapped] =>
[pairedReads] => 440657922
[meanInsertSize] => 478.05
[meanReadDepth] => 21.73
[variantsCalled] => 6268004
[variantsFiltered] => 5977384
[snpCount] => 4198859
[snpHom] => 1865159
[snpHet] => 2333700
[indelCount] => 1788094
[insHom] => 342582
[delHom] => 465082
[insHet] => 462230
[delHet] => 556436
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617038
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617038/BC_26499-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242