Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112365197
                    [wgsExptID] => 25
                    [Batch] => CRUKCI_3
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 17
                    [DateSubmitted] => 2022-11-17
                    [FastqID] => 490
                    [wgsID] => 317
                    [fwdFile] => BC_26499_R1.fastq.gz
                    [fwdMd5] => 3800304fec4b04dbc3ae1f8ca94991be
                    [revFile] => BC_26499_R2.fastq.gz
                    [revMd5] => ed7c3f327dac771e59f88106c84c04bd
                    [rawReads] => 499324804
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10255907
                    [enaRun] => ERR10807440
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 491
                    [wgsID] => 317
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-20 15:39:00
                    [dateCompleted] => 2023-07-21 05:37:00
                    [bamMd5] => 903d4107467588ffde7ffcd833d5f981
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 454257207
                    [primaryReads] => 
                    [mappedReads] => 452502594
                    [primaryMapped] => 
                    [pairedReads] => 440657922
                    [meanInsertSize] => 478.05
                    [meanReadDepth] => 21.73
                    [variantsCalled] => 6268004
                    [variantsFiltered] => 5977384
                    [snpCount] => 4198859
                    [snpHom] => 1865159
                    [snpHet] => 2333700
                    [indelCount] => 1788094
                    [insHom] => 342582
                    [delHom] => 465082
                    [insHet] => 462230
                    [delHet] => 556436
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21617038
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617038/BC_26499-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242