Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365198
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 491
[wgsID] => 318
[fwdFile] => BC_27368_R1.fastq.gz
[fwdMd5] => 5cb11ffe5fc1be679d59834954e3b9a2
[revFile] => BC_27368_R2.fastq.gz
[revMd5] => 635b9d1f890bcf9541b1ee47fd34dfcc
[rawReads] => 793372244
[FastqRCS] => 1
[enaExperiment] => ERX10255908
[enaRun] => ERR10807441
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 492
[wgsID] => 318
[refGenome] => cf4
[dateSubmitted] => 2023-07-20 15:40:00
[dateCompleted] => 2023-07-21 12:36:00
[bamMd5] => 00ecb10413ea86c6aa18bd3cbfb37913
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 797212417
[primaryReads] =>
[mappedReads] => 793308546
[primaryMapped] =>
[pairedReads] => 776232818
[meanInsertSize] => 524.57
[meanReadDepth] => 39.91
[variantsCalled] => 6608856
[variantsFiltered] => 6263815
[snpCount] => 4391440
[snpHom] => 1742827
[snpHet] => 2648613
[indelCount] => 1884085
[insHom] => 312126
[delHom] => 426111
[insHet] => 543832
[delHet] => 650464
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617039
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617039/BC_27368-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242