Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190180
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 128
                    [wgsID] => 266
                    [fwdFile] => BC_27398_R1.fastq.gz
                    [fwdMd5] => c5851a2fac71587d4838711541f87e70
                    [revFile] => BC_27398_R2.fastq.gz
                    [revMd5] => 409f405d340258b513b949cb84e042a8
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665917
                    [enaRun] => ERR11257708
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 172
                    [wgsID] => 266
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-14 12:58:00
                    [dateCompleted] => 2022-10-15 02:33:00
                    [bamMd5] => 6651085fe567dec42bcee8b156ca69b9
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 941859781
                    [primaryReads] => 
                    [mappedReads] => 939335912
                    [primaryMapped] => 
                    [pairedReads] => 921540394
                    [meanInsertSize] => 509.52
                    [meanReadDepth] => 46.91
                    [variantsCalled] => 6628356
                    [variantsFiltered] => 6250729
                    [snpCount] => 4375480
                    [snpHom] => 1743876
                    [snpHet] => 2631604
                    [indelCount] => 1887675
                    [insHom] => 276036
                    [delHom] => 387000
                    [insHet] => 575235
                    [delHet] => 695602
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780954
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780954/BC_27398-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242