Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190180
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 128
[wgsID] => 266
[fwdFile] => BC_27398_R1.fastq.gz
[fwdMd5] => c5851a2fac71587d4838711541f87e70
[revFile] => BC_27398_R2.fastq.gz
[revMd5] => 409f405d340258b513b949cb84e042a8
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665917
[enaRun] => ERR11257708
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 172
[wgsID] => 266
[refGenome] => cf4
[dateSubmitted] => 2022-10-14 12:58:00
[dateCompleted] => 2022-10-15 02:33:00
[bamMd5] => 6651085fe567dec42bcee8b156ca69b9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 941859781
[primaryReads] =>
[mappedReads] => 939335912
[primaryMapped] =>
[pairedReads] => 921540394
[meanInsertSize] => 509.52
[meanReadDepth] => 46.91
[variantsCalled] => 6628356
[variantsFiltered] => 6250729
[snpCount] => 4375480
[snpHom] => 1743876
[snpHet] => 2631604
[indelCount] => 1887675
[insHom] => 276036
[delHom] => 387000
[insHet] => 575235
[delHet] => 695602
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21780954
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780954/BC_27398-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242