Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112365199
                    [wgsExptID] => 25
                    [Batch] => CRUKCI_3
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 17
                    [DateSubmitted] => 2022-11-17
                    [FastqID] => 492
                    [wgsID] => 319
                    [fwdFile] => BC_27986_R1.fastq.gz
                    [fwdMd5] => 5e76dd698b33b48ea70ec77a65b6eb76
                    [revFile] => BC_27986_R2.fastq.gz
                    [revMd5] => 9bdc045f2c92537383ba6420c83eff65
                    [rawReads] => 632024860
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10255909
                    [enaRun] => ERR10807442
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 493
                    [wgsID] => 319
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-24 10:21:00
                    [dateCompleted] => 2023-07-25 03:04:00
                    [bamMd5] => 9a056cfc71b91c46c479b8bbfd8c8bb7
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 553025745
                    [primaryReads] => 
                    [mappedReads] => 550062907
                    [primaryMapped] => 
                    [pairedReads] => 534837650
                    [meanInsertSize] => 501.48
                    [meanReadDepth] => 27.09
                    [variantsCalled] => 6394203
                    [variantsFiltered] => 6080884
                    [snpCount] => 4271856
                    [snpHom] => 1857226
                    [snpHet] => 2414630
                    [indelCount] => 1819083
                    [insHom] => 337476
                    [delHom] => 457684
                    [insHet] => 484100
                    [delHet] => 581183
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21617040
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617040/BC_27986-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242