Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365200
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 493
[wgsID] => 320
[fwdFile] => BC_28080_R1.fastq.gz
[fwdMd5] => 88f393d643d8f87f7af9f1da46132e3a
[revFile] => BC_28080_R2.fastq.gz
[revMd5] => 4354cbfeac8b83093fecdcb3cb9df84f
[rawReads] => 792575114
[FastqRCS] => 1
[enaExperiment] => ERX10255910
[enaRun] => ERR10807443
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 494
[wgsID] => 320
[refGenome] => cf4
[dateSubmitted] => 2023-07-24 10:21:00
[dateCompleted] => 2023-07-25 07:19:00
[bamMd5] => caf8cdfe15887c22b45c61721ef36516
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 696326352
[primaryReads] =>
[mappedReads] => 692810891
[primaryMapped] =>
[pairedReads] => 674728132
[meanInsertSize] => 481.11
[meanReadDepth] => 33.59
[variantsCalled] => 6558806
[variantsFiltered] => 6222912
[snpCount] => 4366082
[snpHom] => 1782023
[snpHet] => 2584059
[indelCount] => 1868105
[insHom] => 320984
[delHom] => 437326
[insHet] => 526063
[delHet] => 630048
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617041
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617041/BC_28080-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242