Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190196
[wgsExptID] => 11
[Batch] => Edinburgh_1
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 6
[DateSubmitted] =>
[FastqID] => 481
[wgsID] => 129
[fwdFile] => BC_29772_R1.fastq.gz
[fwdMd5] => 42edf7f9f5a9f749ccf19ba00f4b3ae1
[revFile] => BC_29772_R2.fastq.gz
[revMd5] => 77aeb101c50e847c7ad7097f9d4cc3b6
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10810959
[enaRun] => ERR11403168
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 168
[wgsID] => 129
[refGenome] => cf4
[dateSubmitted] => 2022-10-14 12:32:00
[dateCompleted] => 2022-10-15 04:41:00
[bamMd5] => 2bc7b39e2f9539cf2e3ee4b406a12dce
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 936031491
[primaryReads] =>
[mappedReads] => 934039309
[primaryMapped] =>
[pairedReads] => 917514472
[meanInsertSize] => 467.13
[meanReadDepth] => 34.81
[variantsCalled] => 6678592
[variantsFiltered] => 6326455
[snpCount] => 4421719
[snpHom] =>
[snpHet] =>
[indelCount] => 1917269
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21789636
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789636/BC_29772-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242