Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190181
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 129
[wgsID] => 267
[fwdFile] => BC_30512_R1.fastq.gz
[fwdMd5] => a61a0ed6d41bcf3ebb31b049ed7cac54
[revFile] => BC_30512_R2.fastq.gz
[revMd5] => 400a5563a21a74ccad1dd609c4a173f0
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665918
[enaRun] => ERR11257709
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 173
[wgsID] => 267
[refGenome] => cf4
[dateSubmitted] => 2022-10-17 13:28:00
[dateCompleted] => 2022-10-18 09:57:00
[bamMd5] => 3644bd98a53ff7318e1e85be7a1a93d9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 903871331
[primaryReads] =>
[mappedReads] => 737691619
[primaryMapped] =>
[pairedReads] => 722464218
[meanInsertSize] => 454.17
[meanReadDepth] => 35.57
[variantsCalled] => 6515659
[variantsFiltered] => 6181962
[snpCount] => 4327896
[snpHom] => 1793688
[snpHet] => 2534208
[indelCount] => 1865788
[insHom] => 286578
[delHom] => 401763
[insHet] => 551882
[delHet] => 668575
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21780955
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780955/BC_30512-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242