Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190207
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 130
[wgsID] => 154
[fwdFile] => BC_31618_R1.fastq.gz
[fwdMd5] => c88c7511f6972869fc9fad8799b0147a
[revFile] => BC_31618_R2.fastq.gz
[revMd5] => 9c9b4fba54fb2dd6a64ba033291099c3
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692173
[enaRun] => ERR11284564
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 171
[wgsID] => 154
[refGenome] => cf4
[dateSubmitted] => 2022-10-14 12:47:00
[dateCompleted] => 2022-10-15 06:00:00
[bamMd5] => fe1a3d399d1a11753d97699bada411cb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 971243160
[primaryReads] =>
[mappedReads] => 969226064
[primaryMapped] =>
[pairedReads] => 950389650
[meanInsertSize] => 458.48
[meanReadDepth] => 44.02
[variantsCalled] => 6183254
[variantsFiltered] => 5772791
[snpCount] => 4020504
[snpHom] =>
[snpHet] =>
[indelCount] => 1762469
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21782987
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782987/BC_31618-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242