Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112365205
                    [wgsExptID] => 25
                    [Batch] => CRUKCI_3
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 17
                    [DateSubmitted] => 2022-11-17
                    [FastqID] => 498
                    [wgsID] => 325
                    [fwdFile] => BC_32070_R1.fastq.gz
                    [fwdMd5] => cba8bf4768ab0a1f722f8505d45ece75
                    [revFile] => BC_32070_R2.fastq.gz
                    [revMd5] => dc27bb31bbcf56f1c405ba9bd374e4b2
                    [rawReads] => 458875298
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10255915
                    [enaRun] => ERR10807448
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 499
                    [wgsID] => 325
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-27 15:14:00
                    [dateCompleted] => 2023-07-28 13:12:00
                    [bamMd5] => bf4d82a0e91c362e1a72cc2697747f55
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 436520895
                    [primaryReads] => 
                    [mappedReads] => 434790726
                    [primaryMapped] => 
                    [pairedReads] => 422310010
                    [meanInsertSize] => 444.58
                    [meanReadDepth] => 20.45
                    [variantsCalled] => 6301149
                    [variantsFiltered] => 6046462
                    [snpCount] => 4253101
                    [snpHom] => 1791110
                    [snpHet] => 2461991
                    [indelCount] => 1803161
                    [insHom] => 324298
                    [delHom] => 444050
                    [insHet] => 487421
                    [delHet] => 587669
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21617046
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617046/BC_32070-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242