Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721094
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 583
                    [wgsID] => 346
                    [fwdFile] => BC_37265_R1.fastq.gz
                    [fwdMd5] => 0db89d1ca3a2f39fda6327111383c5db
                    [revFile] => BC_37265_R2.fastq.gz
                    [revMd5] => 8e57f6ccd57e563647d7b2528bccbecf
                    [rawReads] => 794604702
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632422
                    [enaRun] => ERR11203038
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 802
                    [wgsID] => 346
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-19 12:38:00
                    [dateCompleted] => 2023-06-20 04:20:00
                    [bamMd5] => 3c0b08785ab24863a5ebed7f1e6dd374
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 633387602
                    [primaryReads] => 
                    [mappedReads] => 632290144
                    [primaryMapped] => 
                    [pairedReads] => 613581272
                    [meanInsertSize] => 390.35
                    [meanReadDepth] => 31.24
                    [variantsCalled] => 6304079
                    [variantsFiltered] => 5985567
                    [snpCount] => 4190911
                    [snpHom] => 1911263
                    [snpHet] => 2279648
                    [indelCount] => 1804736
                    [insHom] => 311336
                    [delHom] => 434893
                    [insHet] => 492128
                    [delHet] => 603700
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817119
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817119/BC_37265-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242