Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365208
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 501
[wgsID] => 328
[fwdFile] => BC_39350_R1.fastq.gz
[fwdMd5] => 3b38f5c69f440c9441689524efb1fd4f
[revFile] => BC_39350_R2.fastq.gz
[revMd5] => 555dc3890bfb01313517e646b4292559
[rawReads] => 1034674180
[FastqRCS] => 1
[enaExperiment] => ERX10255918
[enaRun] => ERR10807451
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 502
[wgsID] => 328
[refGenome] => cf4
[dateSubmitted] => 2023-07-27 15:15:00
[dateCompleted] => 2023-07-29 04:14:00
[bamMd5] => 4092023286fe03d67e35edd213598661
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1036879942
[primaryReads] =>
[mappedReads] => 1031596763
[primaryMapped] =>
[pairedReads] => 1003839098
[meanInsertSize] => 497.01
[meanReadDepth] => 48.65
[variantsCalled] => 6491120
[variantsFiltered] => 6153543
[snpCount] => 4298333
[snpHom] => 1832534
[snpHet] => 2465799
[indelCount] => 1866429
[insHom] => 327917
[delHom] => 445583
[insHet] => 522822
[delHet] => 617202
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617049
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617049/BC_39350-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242